species:   Clros
pid:       PID2217
parent:    cro-mir-7
paralog:   
locus:     CADEHS020000012.2:1157823-1157879
matures:   ['GCCGAUUAGUAGUUGGGUCGG', 'AUCCCGUCUGCUCUCCGCAC']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000012.2:1157823-1157879

1347 out of bounds
228 alignments
228 proper strand
222 stranded perfect matches

********************              ***********************
AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG
..((((.(((((.((.((.(.(((......))).).)).))..))))).))))....
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=112 c
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 c*
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=112 ma
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 ma*

AUCCCGUCUGCUCUCCGCACG------------------------------------ l=21 a=1 
-----GUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCC------------------ l=34 a=1 
------UCUGCUCUCCGCACGUUAAGCUAGUAAGGGGC------------------- l=32 a=3 
-------------------CGUUAAGCUAGU-------------------------- l=12 a=1 
-------------------CGUUAAGCUAGUAAGGGGCCa----------------- l=21 a=1 
--------------------GUUAAGCUAGUAAGGGGC------------------- l=18 a=2 
---------------------UUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGU--- l=33 a=1 
---------------------UUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG l=36 a=1 
-----------------------AAGCUAGUAgGGGGCCG----------------- l=17 a=1 
-----------------------AAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG l=34 a=1 
------------------------AGCUAGUAAGGGGCCGAUUAGUAGUUGGGUC-- l=31 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGG----- l=26 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGGGU--- l=28 a=1 
---------------------------UAGUAAGGGGCC------------------ l=12 a=1 
---------------------------UAGUAAGGGGCCGAUUAGUAGUU------- l=23 a=1 
-----------------------------GUAAGGGGCCGAUUAGUAGUU------- l=21 a=1 
-----------------------------GUAAGGGGCgGAUUAGUAGUUGGGU--- l=25 a=1 
-----------------------------GUAAGGGGCgGAUUAGUAGUUGGGUCGG l=28 a=1 
------------------------------UAAGGGGCCGAUUAGUAGU-------- l=19 a=2 
------------------------------UAAGGGGCCGAUUAGUAGUUG------ l=21 a=1 
------------------------------UAAGGGGCCGAUUAGUAGUUGGGUC-- l=25 a=1 
--------------------------------AGGGGCCGAUUAGUAGUU------- l=18 a=1 
--------------------------------AGGGGCCGAUUAGUAGUUGGGUC-- l=23 a=1 
---------------------------------GGGGCCGAUUAGUAGUUGGGUC-- l=22 a=1 
----------------------------------GGGCCGAUUAGUAGUUGGGU--- l=20 a=1 
----------------------------------GGGCCGAUUAGUAGUUGGGUC-- l=21 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGG---- l=18 a=2 
-----------------------------------GGCCGAUUAGUAGUUGGGU--- l=19 a=2 
-----------------------------------GGCCGAUUAGUAGUUGGGUC-- l=20 a=5 
-----------------------------------GGCCGAUUAGUAGUUGGGUCG- l=21 a=2 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGG l=22 a=20 
------------------------------------GCCGAUUAGUAGUUG------ l=15 a=2 
------------------------------------GCCGAUUAGUAGUUGG----- l=16 a=2 
------------------------------------GCCGAUUAGUAGUUGGG---- l=17 a=15 
------------------------------------GCCGAUUAGUAGUUGGGU--- l=18 a=9 
------------------------------------GCCGAUUAGUAGUUGGGUC-- l=19 a=12 
------------------------------------GCCGAUUAGUAGUUGGGaC-- l=19 a=1 
------------------------------------GCCGAUUAGUAGUUGGGUCG- l=20 a=4 
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=112 (c,ma)
------------------------------------GCCGAUgAGUAGUUGGGUCGG l=21 a=1 
-------------------------------------CCGAUUAGUAGUUGGGU--- l=17 a=4 
-------------------------------------CCGAUUAGUAGUUGGGUC-- l=18 a=2 
-------------------------------------CCGAUUAGUAGUUGGGUCG- l=19 a=2 
-------------------------------------CCGAUUAGUAGUUGGGUCGG l=20 a=1 

mb-01111
ax-1001011
ku-01
ss-101111101110
fn-111
